STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00004439Fibrillar collagen NC1 domain-containing protein. (547 aa)    
Predicted Functional Partners:
pdam_00008171
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.916
pdam_00001495
Integrin beta; Belongs to the integrin beta chain family.
    
 0.737
pdam_00017623
Integrin beta; Belongs to the integrin beta chain family.
    
 0.737
pdam_00008170
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.707
pdam_00012669
EMI domain-containing protein.
  
  
  0.569
pdam_00014645
Uncharacterized protein.
  
     0.535
pdam_00024152
Uncharacterized protein.
  
     0.531
pdam_00001258
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
  
     0.522
pdam_00009700
Uncharacterized protein.
  
     0.439
pdam_00015216
Uncharacterized protein.
  
     0.406
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.