STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00005742Fe2OG dioxygenase domain-containing protein. (424 aa)    
Predicted Functional Partners:
pdam_00018580
Fe2OG dioxygenase domain-containing protein.
      
 0.447
pdam_00004255
2OG-FeII_Oxy_2 domain-containing protein.
      
 0.432
pdam_00005344
Uncharacterized protein; Belongs to the MT-A70-like family.
   
  
 0.426
pdam_00018366
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6; Substrate-binding subunit of tRNA (adenine-N1-)- methyltransferase, which catalyzes the formation of N1-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.420
pdam_00018582
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.410
pdam_00023552
JmjC domain-containing protein.
   
  
 0.408
pdam_00007875
Uncharacterized protein.
      
 0.407
pdam_00013625
MTS domain-containing protein.
      
 0.407
pdam_00001747
Uncharacterized protein.
      
 0.407
pdam_00016697
Fe2OG dioxygenase domain-containing protein.
      
 0.404
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.