pdam_00020012 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00020012

Uncharacterized protein. (380 aa)

Predicted Functional Partners:

pdam_00007230

0.910

pdam_00000926

0.909

pdam_00000922

0.909

pdam_00019669

0.903

pdam_00013807

0.900

pdam_00007139

0.900

pdam_00003482

0.900

pdam_00011887

0.512

pdam_00005337

0.494

pdam_00005105

0.468

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00000922	pdam_00007230	A0A3M6T6E7	A0A3M6USA0	Uncharacterized protein.	Uncharacterized protein.	0.454
pdam_00000922	pdam_00019669	A0A3M6T6E7	A0A3M6TG07	Uncharacterized protein.	Uncharacterized protein.	0.909
pdam_00000922	pdam_00020012	A0A3M6T6E7	A0A3M6UWI4	Uncharacterized protein.	Uncharacterized protein.	0.909
pdam_00000926	pdam_00007230	A0A3M6T6D2	A0A3M6USA0	Uncharacterized protein.	Uncharacterized protein.	0.440
pdam_00000926	pdam_00019669	A0A3M6T6D2	A0A3M6TG07	Uncharacterized protein.	Uncharacterized protein.	0.909
pdam_00000926	pdam_00020012	A0A3M6T6D2	A0A3M6UWI4	Uncharacterized protein.	Uncharacterized protein.	0.909
pdam_00003482	pdam_00019669	A0A3M6V4X2	A0A3M6TG07	Uncharacterized protein.	Uncharacterized protein.	0.900
pdam_00003482	pdam_00020012	A0A3M6V4X2	A0A3M6UWI4	Uncharacterized protein.	Uncharacterized protein.	0.900
pdam_00005105	pdam_00011887	A0A3M6TN66	A0A3M6V092	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.998
pdam_00005105	pdam_00019669	A0A3M6TN66	A0A3M6TG07	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Uncharacterized protein.	0.468
pdam_00005105	pdam_00020012	A0A3M6TN66	A0A3M6UWI4	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Uncharacterized protein.	0.468
pdam_00005337	pdam_00011887	A0A3M6U2U0	A0A3M6V092	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.959
pdam_00005337	pdam_00019669	A0A3M6U2U0	A0A3M6TG07	Uncharacterized protein.	Uncharacterized protein.	0.494
pdam_00005337	pdam_00020012	A0A3M6U2U0	A0A3M6UWI4	Uncharacterized protein.	Uncharacterized protein.	0.494
pdam_00007139	pdam_00007230	A0A3M6TEQ4	A0A3M6USA0	Uncharacterized protein.	Uncharacterized protein.	0.432
pdam_00007139	pdam_00019669	A0A3M6TEQ4	A0A3M6TG07	Uncharacterized protein.	Uncharacterized protein.	0.900
pdam_00007139	pdam_00020012	A0A3M6TEQ4	A0A3M6UWI4	Uncharacterized protein.	Uncharacterized protein.	0.900
pdam_00007230	pdam_00000922	A0A3M6USA0	A0A3M6T6E7	Uncharacterized protein.	Uncharacterized protein.	0.454
pdam_00007230	pdam_00000926	A0A3M6USA0	A0A3M6T6D2	Uncharacterized protein.	Uncharacterized protein.	0.440
pdam_00007230	pdam_00007139	A0A3M6USA0	A0A3M6TEQ4	Uncharacterized protein.	Uncharacterized protein.	0.432