STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00013840Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
pdam_00014439
Uncharacterized protein.
  
 0.998
pdam_00006220
Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.
  
 0.997
pdam_00002402
Uncharacterized protein.
   
 
 0.938
pdam_00024168
Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
    
 0.929
pdam_00022455
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 
 0.921
pdam_00003946
Uncharacterized protein.
     
 0.915
pdam_00020310
Uncharacterized protein.
     
  0.900
pdam_00011997
Uncharacterized protein.
     
 0.900
pdam_00005200
Thioredoxin domain-containing protein.
  
  
 0.851
pdam_00012250
Uncharacterized protein.
  
 
 0.846
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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