STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00006463Uncharacterized protein. (341 aa)    
Predicted Functional Partners:
pdam_00017689
Uncharacterized protein.
   
  
 0.766
pdam_00009479
CTP_transf_like domain-containing protein.
      
 0.760
pdam_00015379
Uncharacterized protein.
    
 
 0.687
pdam_00009074
Uncharacterized protein.
 
      0.667
pdam_00004236
Uncharacterized protein.
   
0.539
pdam_00004924
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
  
 0.486
pdam_00006045
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 
 0.465
pdam_00016431
Uncharacterized protein.
    
 
 0.456
pdam_00012789
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.451
pdam_00021429
Autophagy-related protein 3.
   
  
 0.415
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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