STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00012075HORMA domain-containing protein. (491 aa)    
Predicted Functional Partners:
pdam_00012076
HORMA domain-containing protein.
 
      0.720
pdam_00003034
RECA_3 domain-containing protein.
   
 
 0.601
pdam_00004795
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.535
pdam_00015424
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.
   
 
 0.532
pdam_00013818
Uncharacterized protein.
      
 0.529
pdam_00014730
TP6A_N domain-containing protein.
   
  
 0.506
pdam_00014951
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
  
 0.473
pdam_00003705
Uncharacterized protein.
    
 
 0.472
pdam_00023373
Structural maintenance of chromosomes protein.
    
 
 0.465
pdam_00002015
Uncharacterized protein.
   
 
 0.440
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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