STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00010464Uncharacterized protein. (211 aa)    
Predicted Functional Partners:
pdam_00009338
Thymidine kinase.
  
 
  0.730
pdam_00018596
Uncharacterized protein.
     
 0.668
pdam_00025381
S-AdoMet_synt_C domain-containing protein.
  
 
 0.591
pdam_00004044
Uncharacterized protein.
  
 
 0.591
pdam_00010789
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 
 0.591
pdam_00003200
Uncharacterized protein.
    
  0.584
pdam_00019648
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.
    
  0.533
pdam_00012551
Uncharacterized protein.
     
 0.528
pdam_00021543
Uncharacterized protein.
     
 0.528
pdam_00023357
Uncharacterized protein.
  
 
  0.505
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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