STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00017028Lon protease homolog; Belongs to the peptidase S16 family. (856 aa)    
Predicted Functional Partners:
pdam_00000187
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
  
 0.831
pdam_00000132
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.796
pdam_00011314
Uncharacterized protein.
  
  
 0.783
pdam_00013960
Uncharacterized protein.
 
 
 0.764
pdam_00019571
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.764
pdam_00002241
ATP-dependent Clp protease proteolytic subunit.
  
 
 0.727
pdam_00005770
Uncharacterized protein; Belongs to the GroES chaperonin family.
  
  
 0.672
pdam_00012843
ClpB_D2-small domain-containing protein.
  
 
 0.640
pdam_00012844
ANK_REP_REGION domain-containing protein.
  
 
 0.640
pdam_00011895
Uncharacterized protein.
   
 0.639
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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