STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00013742AMP_N domain-containing protein. (540 aa)    
Predicted Functional Partners:
pdam_00014262
Peptidase_M3 domain-containing protein.
   
 
 0.758
pdam_00021293
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 
 0.704
pdam_00016064
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 
 0.641
pdam_00016123
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
      
 0.623
pdam_00012255
Peptidase_M48 domain-containing protein.
  
  
 0.568
pdam_00020973
Uncharacterized protein.
    
 
 0.534
pdam_00024955
Uncharacterized protein; Belongs to the peptidase M18 family.
   
 
 0.417
pdam_00024954
Uncharacterized protein.
   
 
 0.417
pdam_00007182
ALMS_motif domain-containing protein.
      
 0.407
pdam_00003478
Rhomboid domain-containing protein.
      
 0.405
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.