STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00007799HECT domain-containing protein. (1020 aa)    
Predicted Functional Partners:
pdam_00018987
HECT domain-containing protein.
     
 
0.900
pdam_00022768
Uncharacterized protein.
 
      0.808
pdam_00012958
Uncharacterized protein.
     
0.666
pdam_00002896
Uncharacterized protein.
 
  
 0.619
pdam_00010252
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.526
pdam_00005915
Uncharacterized protein.
    
 0.482
pdam_00021478
FYVE-type domain-containing protein.
 
  
  0.466
pdam_00003555
VWFA domain-containing protein.
    
 
 0.462
pdam_00010941
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.441
pdam_00020580
Uncharacterized protein.
    
 0.433
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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