STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEE38440.1Voltage-gated sodium channel; [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (261 aa)    
Predicted Functional Partners:
rumA
23S rRNA (uracil-5-)-methyltransferase; [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.838
EEE38550.1
ABC transporter, transmembrane ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.684
RKLH11_49
ABC transporter, transmembrane ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.684
EEE36362.1
ErfK/YbiS/YcfS/YnhG family protein; [S] COG3034 Uncharacterized protein conserved in bacteria.
       0.673
EEE37614.1
polyA polymerase family protein; [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.496
hslO
Chaperonin HslO; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.496
EEE38207.1
Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
     0.403
Your Current Organism:
Rhodobacteraceae bacterium KLH11
NCBI taxonomy Id: 467661
Other names: R. bacterium KLH11, Rhodobacteraceae bacterium str. KLH11, Rhodobacteraceae bacterium strain KLH11, Rhodobacterales bacterium KLH11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.