STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEE35468.1DNA-binding response regulator, LuxR family; [T] COG4566 Response regulator. (204 aa)    
Predicted Functional Partners:
EEE35206.1
Sensory box histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
 
 0.970
EEE39145.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 0.969
EEE36937.1
Ggdef family protein; [T] COG2203 FOG: GAF domain.
   
 0.872
EEE36075.1
[TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
  
  0.871
EEE35453.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
 0.861
EEE35947.1
Sensory box histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 0.839
EEE36059.1
Two component sensor kinase; [T] COG4585 Signal transduction histidine kinase.
 
 0.836
cckA
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.762
fixL
Sensor protein FixL; [T] COG0642 Signal transduction histidine kinase.
   
 0.688
EEE35564.1
Non-motile and phage-resistance protein; [T] COG0642 Signal transduction histidine kinase.
   
  0.685
Your Current Organism:
Rhodobacteraceae bacterium KLH11
NCBI taxonomy Id: 467661
Other names: R. bacterium KLH11, Rhodobacteraceae bacterium str. KLH11, Rhodobacteraceae bacterium strain KLH11, Rhodobacterales bacterium KLH11
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