STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEE36757.1Putative dioxygenase subunit alpha YeaW; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit. (360 aa)    
Predicted Functional Partners:
EEE38539.1
SIS domain protein; [K] COG1737 Transcriptional regulators.
 
     0.929
EEE37622.1
Mandelate racemase/muconate lactonizing enzyme; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.888
EEE39061.1
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
  0.884
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
 0.882
EEE36585.1
Putative reductive dehalogenase subfamily; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
 0.795
EEE38235.1
[S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
   
 0.769
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.757
EEE34976.1
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
 0.746
RKLH11_6
Sarcosine oxidase, alpha subunit family; [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
 0.739
EEE35006.1
Phthalate 4,5-dioxygenase oxygenase reductase subunit; [P] COG4097 Predicted ferric reductase.
  
 
 0.737
Your Current Organism:
Rhodobacteraceae bacterium KLH11
NCBI taxonomy Id: 467661
Other names: R. bacterium KLH11, Rhodobacteraceae bacterium str. KLH11, Rhodobacteraceae bacterium strain KLH11, Rhodobacterales bacterium KLH11
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