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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0043Beta-galactosidase; Identified by match to protein family HMM PF01301; match to protein family HMM PF02449; Belongs to the glycosyl hydrolase 35 family. (592 aa)    
Predicted Functional Partners:
SGO_1486
Beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
 0.964
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.949
SGO_0045
PTS system, IIC component; Identified by match to protein family HMM PF03609.
 
   
 0.809
SGO_0044
PTS system, IIB component; Identified by match to protein family HMM PF03830.
     
 0.806
SGO_0046
PTS system, IID component; Identified by match to protein family HMM PF03613.
 
   
 0.783
SGO_1771
Conserved hypothetical protein; Identified by match to protein family HMM PF00754.
 
 0.768
SGO_0047
PTS system, IIA component; Identified by match to protein family HMM PF03610.
     
 0.715
SGO_0048
Tagatose-6-phosphate ketose/aldose isomerase; Identified by match to protein family HMM PF01380.
 
   
 0.710
fucA1
alpha-L-fucosidase; Identified by match to protein family HMM PF01120.
 
 
 0.647
SGO_1839
Conserved hypothetical protein.
   
 0.640
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.