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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0044PTS system, IIB component; Identified by match to protein family HMM PF03830. (158 aa)    
Predicted Functional Partners:
SGO_0045
PTS system, IIC component; Identified by match to protein family HMM PF03609.
 
 
 0.971
SGO_0046
PTS system, IID component; Identified by match to protein family HMM PF03613.
 
 
 0.971
SGO_0047
PTS system, IIA component; Identified by match to protein family HMM PF03610.
 
  
 0.963
SGO_1681
PTS system, mannose/fructose/sorbose family, IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.
 
 
 0.902
SGO_1680
Phosphotransferase system enzyme II; Identified by match to protein family HMM PF03609.
 
 
 0.894
SGO_1890
PTS system, fructose(mannose)-specific IID; Identified by match to protein family HMM PF03613.
 
 
 0.850
SGO_0043
Beta-galactosidase; Identified by match to protein family HMM PF01301; match to protein family HMM PF02449; Belongs to the glycosyl hydrolase 35 family.
     
 0.806
SGO_0048
Tagatose-6-phosphate ketose/aldose isomerase; Identified by match to protein family HMM PF01380.
 
  
 0.754
SGO_1857
PTS system, IIABC components; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996.
   
  
 0.726
SGO_1893
PTS system, fructose(mannose)-specific IIA component; Identified by match to protein family HMM PF03610.
 
  
 0.683
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.