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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0045PTS system, IIC component; Identified by match to protein family HMM PF03609. (304 aa)    
Predicted Functional Partners:
SGO_0046
PTS system, IID component; Identified by match to protein family HMM PF03613.
 0.999
SGO_1679
Phosphotransferase system enzyme II; Identified by match to protein family HMM PF03610; match to protein family HMM PF03830.
 
 0.998
SGO_0047
PTS system, IIA component; Identified by match to protein family HMM PF03610.
 
 0.996
SGO_1681
PTS system, mannose/fructose/sorbose family, IID component; Identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828.
 0.993
SGO_0044
PTS system, IIB component; Identified by match to protein family HMM PF03830.
 
 
 0.971
SGO_1891
PTS system, IIC component; Identified by match to protein family HMM PF03609.
  
  
  0.912
SGO_0048
Tagatose-6-phosphate ketose/aldose isomerase; Identified by match to protein family HMM PF01380.
 
  
 0.911
SGO_1680
Phosphotransferase system enzyme II; Identified by match to protein family HMM PF03609.
  
  
 
0.911
SGO_1556
Phosphocarrier protein HPr; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
 0.909
manA
Mannose-6-phosphate isomerase, class I; Identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
  0.903
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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