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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0085Putative transcriptional regulator (DeoR family); Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279. (248 aa)    
Predicted Functional Partners:
fruA
PTS system, fructose specific IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
 
  
 0.842
SGO_1793
Transcription regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.
  
     0.774
SGO_0083
Hydrolase, HAD superfamily, Cof family; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484.
  
    0.715
fruB
1-phosphofructokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.570
lacC
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR01231; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.540
lacC-2
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR01231; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.536
lacB-2
Galactose-6-phosphate isomerase, LacB subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01119.
  
  
 0.474
lacB-1
Galactose-6-phosphate isomerase, LacB subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01119.
  
  
 0.474
lacA-1
Galactose-6-phosphate isomerase, LacA subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01118.
  
  
 0.469
lacA-2
Galactose-6-phosphate isomerase, LacA subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01118.
  
  
 0.469
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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