Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_0102Maltodextrin transport system permease protein malD; Identified by match to protein family HMM PF00528. (280 aa)    
Predicted Functional Partners:
SGO_0103
Maltodextrin transport system permease protein malC; Identified by match to protein family HMM PF00528; match to protein family HMM PF05154.
 
 0.999
SGO_0104
Maltose/maltodextrin-binding protein precursor; Identified by match to protein family HMM PF01547.
 
 0.999
SGO_0352
ABC transporter, ATP-binding protein SP1580; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.997
malA
Maltodextrose utilization protein malA.
 
  
 0.980
SGO_1304
Transmembrane permease MsmF; Identified by match to protein family HMM PF00528.
 
 
 0.975
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
 
 0.974
SGO_0100
Maltose operon transcription repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
  
 0.924
SGO_1351
Neopullulanase alpha amylase domain; Identified by match to protein family HMM PF00128; match to protein family HMM PF02903; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.811
malQ
4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
  
  
 0.774
SGO_1305
Substrate-binding protein MsmE; Identified by match to protein family HMM PF01547.
 
  
 0.713
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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