Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SGO_0107LPXTG cell wall surface protein, collagen binding domain; Identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM TIGR01167. (1058 aa)    
Predicted Functional Partners:
SGO_2005
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
 
  
 0.779
cshA
Surface-associated protein CshA; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.759
cshB
Surface-associated protein CshB; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.759
SGO_0144
Conserved hypothetical protein.
  
    0.722
SGO_1615
CAAX amino terminal protease family; Identified by match to protein family HMM PF02517.
  
     0.713
SGO_0939
4-hydroxybenzoate octaprenyltransferase related protein.
  
     0.697
SGO_0828
Conserved hypothetical protein.
  
     0.669
SGO_0935
CDP-diglyceride synthetase; Identified by match to protein family HMM PF01864.
  
     0.631
SGO_0941
Conserved hypothetical protein.
  
    0.613
SGO_1349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.589
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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