Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_0119Conserved hypothetical protein subfamily; Identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022. (150 aa)    
Predicted Functional Partners:
SGO_0120
Bacterial extracellular solute-binding protein domain protein; Identified by match to protein family HMM PF01547.
 
     0.802
nanE
N-acetylmannosamine-6-phosphate epimerase, putative; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
  
 0.788
SGO_1486
Beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
 
 
 0.775
SGO_0124
N-acetylneuraminate lyase; Identified by match to protein family HMM PF00701.
 
  
 0.758
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
 
     0.612
SGO_0122
ABC transporter, permease protein SP1688; Identified by match to protein family HMM PF00528.
 
     0.612
SGO_0123
Oxidoreductase, Gfo/Idh/MocA family SP1325; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447.
 
     0.599
xylR
Glucokinase; Identified by match to protein family HMM PF00480.
 
    0.567
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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