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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0121ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528. (294 aa)    
Predicted Functional Partners:
SGO_0122
ABC transporter, permease protein SP1688; Identified by match to protein family HMM PF00528.
 0.999
SGO_0120
Bacterial extracellular solute-binding protein domain protein; Identified by match to protein family HMM PF01547.
 
 0.998
SGO_1303
Transmembrane permease MsmG; Identified by match to protein family HMM PF00528.
 
 0.973
SGO_0102
Maltodextrin transport system permease protein malD; Identified by match to protein family HMM PF00528.
 
 0.964
SGO_0352
ABC transporter, ATP-binding protein SP1580; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 
 0.963
SGO_1305
Substrate-binding protein MsmE; Identified by match to protein family HMM PF01547.
 
 0.944
SGO_1764
ABC transporter, permease protein SP0091; Identified by match to protein family HMM PF00528.
 
 
 0.925
SGO_0104
Maltose/maltodextrin-binding protein precursor; Identified by match to protein family HMM PF01547.
 
 
 0.889
SGO_0123
Oxidoreductase, Gfo/Idh/MocA family SP1325; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447.
 
   
 0.815
SGO_0505
PTS system, IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003.
   
 
 0.768
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.