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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0122ABC transporter, permease protein SP1688; Identified by match to protein family HMM PF00528. (277 aa)    
Predicted Functional Partners:
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
 0.999
SGO_0120
Bacterial extracellular solute-binding protein domain protein; Identified by match to protein family HMM PF01547.
 
 0.998
SGO_1304
Transmembrane permease MsmF; Identified by match to protein family HMM PF00528.
 
 0.973
SGO_0352
ABC transporter, ATP-binding protein SP1580; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.954
SGO_1305
Substrate-binding protein MsmE; Identified by match to protein family HMM PF01547.
 
 
 0.943
SGO_1765
ABC transporter sugar binding protein; Identified by match to protein family HMM PF00528.
 
 
 0.926
SGO_0103
Maltodextrin transport system permease protein malC; Identified by match to protein family HMM PF00528; match to protein family HMM PF05154.
 
 0.897
SGO_0123
Oxidoreductase, Gfo/Idh/MocA family SP1325; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447.
 
    0.808
SGO_1894
Sugar-binding cell envelope protein; Identified by match to protein family HMM PF01547.
 
 
 0.736
nanE
N-acetylmannosamine-6-phosphate epimerase, putative; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
  
  
 0.691
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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