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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0127Phosphosugar-binding transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418. (284 aa)    
Predicted Functional Partners:
SGO_0505
PTS system, IIBC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003.
  
  
 0.889
SGO_0120
Bacterial extracellular solute-binding protein domain protein; Identified by match to protein family HMM PF01547.
 
   
 0.756
SGO_0281
PTS system, beta-glucoside-specific IIABC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995.
  
  
 0.717
SGO_1653
Trehalose PTS enzyme II; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992.
  
  
 0.717
SGO_1857
PTS system, IIABC components; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996.
  
  
 0.717
SGO_0100
Maltose operon transcription repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
   
 0.711
nanE
N-acetylmannosamine-6-phosphate epimerase, putative; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.694
SGO_0122
ABC transporter, permease protein SP1688; Identified by match to protein family HMM PF00528.
 
   
 0.687
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
 
  
 0.686
SGO_1306
Transcriptional repressor MsmR; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
   
 0.684
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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