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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0128Conserved hypothetical protein. (107 aa)    
Predicted Functional Partners:
ppx1
Inorganic pyrophosphatase, manganese-dependent; Identified by match to protein family HMM PF01368; match to protein family HMM PF02833; Belongs to the PPase class C family.
     
  0.900
atpI
V-type sodium ATP synthase, chain I; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.
       0.800
atpK
V-type sodium ATP synthase, chain K; Identified by match to protein family HMM PF00137; Belongs to the V-ATPase proteolipid subunit family.
       0.552
SGO_0131
V-type sodium ATP synthase, chain E.
       0.543
SGO_0132
ATP synthase (C/AC39) subunit; Identified by match to protein family HMM PF01992.
       0.536
SGO_0133
ATP synthase (F/14-kDa) subunit; Identified by match to protein family HMM PF01990.
       0.536
SGO_0134
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.472
SGO_0127
Phosphosugar-binding transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
       0.465
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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