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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0261Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (214 aa)    
Predicted Functional Partners:
mutS2
DNA mismatch binding protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.783
cvpA
Identified by match to protein family HMM PF02674.
 
     0.673
SGO_0294
ABC transporter, putative; Identified by match to protein family HMM PF00005.
  
     0.649
SGO_1957
Conserved hypothetical protein.
  
     0.626
SGO_0258
Conserved hypothetical protein.
       0.607
SGO_1838
ABC transporter domain protein; Identified by match to protein family HMM PF00005.
  
     0.561
rggB
Putative transcriptional regulator RggB; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716.
  
    0.536
rgg
Transcriptional regulator Rgg; Regulates the expression of glucosyltransferase (gtfG).
  
    0.529
SGO_0262
Dipeptidase; Identified by match to protein family HMM PF03577.
       0.524
SGO_0685
Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
  
    0.519
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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