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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0294ABC transporter, putative; Identified by match to protein family HMM PF00005. (524 aa)    
Predicted Functional Partners:
SGO_0261
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.649
SGO_1957
Conserved hypothetical protein.
  
    0.593
comA
ATP-binding Transport protein ComA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193.
 
 
  
0.562
SGO_0295
Hypothetical protein; Identified by Glimmer2; putative.
       0.538
SGO_0296
Integral membrane protein.
       0.538
SGO_1208
Hypothetical FAD-dependent oxidoreductase, putative.
  
     0.480
SGO_0165
ABC transporter, permease/ATP-binding protein SP2075; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
0.449
SGO_1577
Conserved hypothetical protein.
  
     0.436
rggB
Putative transcriptional regulator RggB; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716.
  
     0.423
SGO_1187
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
0.408
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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