Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SGO_0352ABC transporter, ATP-binding protein SP1580; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily. (376 aa)    
Predicted Functional Partners:
SGO_0102
Maltodextrin transport system permease protein malD; Identified by match to protein family HMM PF00528.
 
 0.997
SGO_0103
Maltodextrin transport system permease protein malC; Identified by match to protein family HMM PF00528; match to protein family HMM PF05154.
 
 0.994
SGO_0104
Maltose/maltodextrin-binding protein precursor; Identified by match to protein family HMM PF01547.
 
 0.994
SGO_0121
ABC transporter, permease protein SP1689; Identified by match to protein family HMM PF00528.
 
 
 0.973
SGO_1304
Transmembrane permease MsmF; Identified by match to protein family HMM PF00528.
 
 
 0.973
SGO_0122
ABC transporter, permease protein SP1688; Identified by match to protein family HMM PF00528.
 
 
 0.962
SGO_1764
ABC transporter, permease protein SP0091; Identified by match to protein family HMM PF00528.
 
 
 0.959
SGO_1303
Transmembrane permease MsmG; Identified by match to protein family HMM PF00528.
 
 
 0.954
SGO_1305
Substrate-binding protein MsmE; Identified by match to protein family HMM PF01547.
 
 
 0.906
SGO_0120
Bacterial extracellular solute-binding protein domain protein; Identified by match to protein family HMM PF01547.
 
 
 0.885
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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