STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadDCadmium resistance protein; Identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779. (204 aa)    
Predicted Functional Partners:
cadX
Cadmium efflux protein, putative; Identified by match to protein family HMM PF01022.
 
  
 0.957
SGO_1598
Conserved hypothetical protein.
  
     0.604
tehB
Tellurite resistance protein TehB; Identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF09313; match to protein family HMM TIGR00477.
  
   
 0.585
SGO_0930
Cation efflux system protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
   
 0.465
SGO_0089
Cation efflux system protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
   
 0.456
SGO_0648
Putative transcriptional repressor; Identified by match to protein family HMM PF00717; match to protein family HMM PF01381.
  
     0.401
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.