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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydDPutative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (558 aa)    
Predicted Functional Partners:
SGO_0466
Membrane protein, putative; Identified by match to protein family HMM PF02361.
 
     0.928
SGO_0465
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02185.
 
     0.926
cydC
Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
   
0.861
SGO_0467
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
    
0.845
SGO_0462
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
metN
ABC transporter, ATP-binding protein SP0151; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
     
0.693
SGO_0459
Succinyl-diaminopimelate desuccinylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
       0.651
SGO_0461
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00528.
       0.651
proV
ABC-type proline/glycine betaine transporter; Identified by match to protein family HMM PF00005.
 
     
0.599
SGO_0579
Amino acid ABC transporter ATP binding protein; Identified by match to protein family HMM PF00005.
 
     
0.477
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.