Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SGO_0465Conserved hypothetical protein; Identified by match to protein family HMM TIGR02185. (198 aa)    
Predicted Functional Partners:
SGO_0466
Membrane protein, putative; Identified by match to protein family HMM PF02361.
 
     0.967
SGO_0467
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
     0.967
cydD
Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.949
cydC
Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.947
SGO_0459
Succinyl-diaminopimelate desuccinylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
       0.794
SGO_0462
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
metN
ABC transporter, ATP-binding protein SP0151; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.768
SGO_0461
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00528.
       0.768
SGO_1330
Transporter; Identified by match to protein family HMM PF00005.
 
     0.701
SGO_1331
HlyB/MsbA family ABC transporter; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.692
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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