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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0468Conserved hypothetical protein; Identified by match to protein family HMM PF01887; match to protein family HMM TIGR03304. (281 aa)    
Predicted Functional Partners:
SGO_0469
Integral membrane protein; Identified by match to protein family HMM PF07155.
 
     0.922
SGO_0489
Identified by match to protein family HMM PF02361.
 
    0.738
SGO_0488
ABC transporter, ATP-binding protein SP0483; Identified by match to protein family HMM PF00005.
 
     0.698
SGO_0465
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02185.
       0.515
SGO_0466
Membrane protein, putative; Identified by match to protein family HMM PF02361.
  
    0.474
SGO_0467
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
  
    0.467
SGO_0459
Succinyl-diaminopimelate desuccinylase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.
       0.464
metN
ABC transporter, ATP-binding protein SP0151; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.464
SGO_0461
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00528.
       0.464
SGO_0471
Identified by match to protein family HMM PF01381.
       0.460
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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