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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0469Integral membrane protein; Identified by match to protein family HMM PF07155. (186 aa)    
Predicted Functional Partners:
SGO_0468
Conserved hypothetical protein; Identified by match to protein family HMM PF01887; match to protein family HMM TIGR03304.
 
     0.922
SGO_0489
Identified by match to protein family HMM PF02361.
 
 
 0.908
SGO_0488
ABC transporter, ATP-binding protein SP0483; Identified by match to protein family HMM PF00005.
 
  
 0.897
SGO_0466
Membrane protein, putative; Identified by match to protein family HMM PF02361.
  
 
 0.719
SGO_0467
ATP binding protein of ABC transporter; Identified by match to protein family HMM PF00005.
 
 
 
 0.714
SGO_0918
Cobalt transport protein superfamily; Identified by match to protein family HMM PF02361.
 
 
 0.669
ecfT
ABC-type putative cobalt transport system, permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.573
SGO_0471
Identified by match to protein family HMM PF01381.
       0.501
SGO_0470
Hypothetical protein; Identified by Glimmer2; putative.
       0.485
SGO_0465
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02185.
       0.479
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.