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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsgPutative permease; Identified by match to protein family HMM PF07690. (411 aa)    
Predicted Functional Partners:
rggD
Putative transcriptional regulator RggD; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716.
 
   
 0.859
rgg
Transcriptional regulator Rgg; Regulates the expression of glucosyltransferase (gtfG).
 
   
 0.709
rggC
Putative transcriptional regulator RggC; Identified by match to protein family HMM TIGR01716.
 
     0.639
gtfG
Glucosyltransferase G; Identified by match to protein family HMM PF01473; match to protein family HMM PF02324.
      
 0.576
SGO_0499
Hypothetical protein; Identified by Glimmer2; putative.
       0.568
fruA
PTS system, fructose specific IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
     
 0.473
birA
BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.452
SGO_1838
ABC transporter domain protein; Identified by match to protein family HMM PF00005.
  
 
 0.404
comB
Transport protein ComB; Identified by match to protein family HMM TIGR01000.
  
   
 0.402
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.