| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SGO_0544 | SGO_0545 | SGO_0544 | SGO_0545 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Identified by match to protein family HMM PF01248. | 0.981 |
| SGO_0544 | infB | SGO_0544 | SGO_0546 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.952 |
| SGO_0544 | nusA | SGO_0544 | SGO_0543 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.967 |
| SGO_0544 | rbfA | SGO_0544 | SGO_0547 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.706 |
| SGO_0544 | rimP | SGO_0544 | SGO_0542 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.941 |
| SGO_0544 | rpsB | SGO_0544 | SGO_2001 | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.442 |
| SGO_0545 | SGO_0544 | SGO_0545 | SGO_0544 | Identified by match to protein family HMM PF01248. | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | 0.981 |
| SGO_0545 | infB | SGO_0545 | SGO_0546 | Identified by match to protein family HMM PF01248. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.988 |
| SGO_0545 | nusA | SGO_0545 | SGO_0543 | Identified by match to protein family HMM PF01248. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.969 |
| SGO_0545 | rbfA | SGO_0545 | SGO_0547 | Identified by match to protein family HMM PF01248. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.511 |
| SGO_0545 | rimP | SGO_0545 | SGO_0542 | Identified by match to protein family HMM PF01248. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.935 |
| SGO_0545 | rplB | SGO_0545 | SGO_1982 | Identified by match to protein family HMM PF01248. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.998 |
| SGO_0545 | rplP | SGO_0545 | SGO_1978 | Identified by match to protein family HMM PF01248. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.995 |
| SGO_0545 | rpsB | SGO_0545 | SGO_2001 | Identified by match to protein family HMM PF01248. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| SGO_0545 | rpsC | SGO_0545 | SGO_1979 | Identified by match to protein family HMM PF01248. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| SGO_0545 | rpsD | SGO_0545 | SGO_2098 | Identified by match to protein family HMM PF01248. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| infB | SGO_0544 | SGO_0546 | SGO_0544 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Protein of unknown function (DUF448) superfamily; Identified by match to protein family HMM PF04296. | 0.952 |
| infB | SGO_0545 | SGO_0546 | SGO_0545 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Identified by match to protein family HMM PF01248. | 0.988 |
| infB | nusA | SGO_0546 | SGO_0543 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.962 |
| infB | rbfA | SGO_0546 | SGO_0547 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.947 |
STRING v12.5 is now available!
