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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0559Hypothetical protein; Identified by Glimmer2; putative. (292 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497.
       0.769
SGO_0558
Hypothetical protein; Identified by Glimmer2; putative.
       0.570
SGO_0557
HsdS specificity protein of type I restriction-modification system; Identified by match to protein family HMM PF01420.
       0.545
hsdR
Type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.519
SGO_0555
Hypothetical protein; Identified by Glimmer2; putative.
       0.518
SGO_0556
DNA helicase-like protein, putative; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
       0.518
SGO_0561
Conserved hypothetical protein.
       0.483
SGO_0562
Helix-turn-helix domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF06114; match to protein family HMM TIGR02607.
       0.483
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.