STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0564Conserved hypothetical protein; Identified by match to protein family HMM TIGR02328. (121 aa)    
Predicted Functional Partners:
SGO_0563
Hypothetical protein; Identified by Glimmer2; putative.
       0.746
SGO_0863
Conserved hypothetical protein; Identified by match to protein family HMM PF08349.
 
     0.647
SGO_1832
Conserved hypothetical protein.
  
     0.585
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
       0.485
SGO_1348
Hypothetical cytosolic protein; Identified by match to protein family HMM PF08020.
  
     0.460
SGO_0556
DNA helicase-like protein, putative; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
 
     0.453
SGO_1086
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.446
SGO_0561
Conserved hypothetical protein.
       0.439
SGO_0562
Helix-turn-helix domain protein; Identified by match to protein family HMM PF01381; match to protein family HMM PF06114; match to protein family HMM TIGR02607.
       0.439
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.