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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0624Conserved hypothetical protein. (105 aa)    
Predicted Functional Partners:
SGO_0625
Protein of unknown function (DUF402) family; Identified by match to protein family HMM PF04167; Belongs to the UPF0374 family.
 
     0.672
SGO_1442
Identified by match to protein family HMM PF00149.
  
     0.561
SGO_0274
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
    0.526
SGO_0757
Peptidase, U32 family; Identified by match to protein family HMM PF01183.
  
     0.485
SGO_0991
Conserved hypothetical protein.
  
     0.482
SGO_0685
Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
  
     0.474
recX
Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family.
       0.450
SGO_0729
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
  
   
 0.444
SGO_0231
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
  
     0.425
SGO_0225
Integral membrane protein; Identified by match to protein family HMM PF05437.
  
     0.417
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.