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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0665Non-heme iron-containing ferritin; Identified by match to protein family HMM PF00210; Belongs to the Dps family. (171 aa)    
Predicted Functional Partners:
SGO_1934
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.716
SGO_0348
Reductase.
     
 0.651
SGO_0664
Type 4 prepilin peptidase; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
     
 0.586
htpx
Heat shock protein; Identified by match to protein family HMM PF01435; Belongs to the peptidase M48B family.
      
 0.580
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
     
 0.580
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
     
 0.577
SGO_0666
Bacterial protein of unknown function (DUF910) family; Identified by match to protein family HMM PF06014.
  
    0.567
SGO_0667
Identified by match to protein family HMM PF00581.
       0.545
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.485
SGO_0021
Conserved domain protein; Identified by match to protein family HMM PF01476.
   
  
 0.462
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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