Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_0666Bacterial protein of unknown function (DUF910) family; Identified by match to protein family HMM PF06014. (86 aa)    
Predicted Functional Partners:
SGO_0667
Identified by match to protein family HMM PF00581.
       0.863
SGO_0220
Protein of unknown function (DUF1447) superfamily; Identified by match to protein family HMM PF07288; Belongs to the UPF0356 family.
  
  
 0.740
SGO_0665
Non-heme iron-containing ferritin; Identified by match to protein family HMM PF00210; Belongs to the Dps family.
       0.701
SGO_0664
Type 4 prepilin peptidase; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
       0.622
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
    0.546
SGO_1377
Sulfatase; Identified by match to protein family HMM PF00884.
 
     0.521
SGO_0852
TPR domain protein; Identified by similarity to GB:AAO81340.1; match to protein family HMM PF00515.
  
     0.506
glcK
Glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.
  
    0.497
SGO_0670
Conserved hypothetical protein.
       0.455
typA
GTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394.
       0.448
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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