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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0757Peptidase, U32 family; Identified by match to protein family HMM PF01183. (248 aa)    
Predicted Functional Partners:
SGO_0756
Integral membrane protein; Identified by match to protein family HMM PF04018.
 
     0.675
SGO_0509
Replication initiation and membrane attachment protein (DnaB) superfamily; Identified by match to protein family HMM PF07261.
  
     0.659
SGO_1114
Protein of unknown function (DUF1149) superfamily; Identified by match to protein family HMM PF06619.
  
     0.654
SGO_1427
Conserved hypothetical protein; Identified by match to protein family HMM PF07997.
  
   
 0.583
SGO_1026
Rhamnosyltransferase; Identified by match to protein family HMM PF05045.
  
     0.580
SGO_0029
Conserved hypothetical protein; Identified by match to protein family HMM PF06257.
  
     0.566
SGO_1149
Pneumococcal vaccine antigen A-like protein.
  
  
 0.556
SGO_0755
Identified by match to protein family HMM PF04073; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.547
SGO_1672
Recombinase, site specific; Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site. Belongs to the 'phage' integrase family. XerD-like subfamily.
  
    0.545
SGO_0759
Cell division protein FtsW; Identified by match to protein family HMM PF01098; Belongs to the SEDS family.
 
     0.526
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.