Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SGO_0789ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF09323. (271 aa)    
Predicted Functional Partners:
SGO_0790
Predicted permease family; Identified by match to protein family HMM PF03773.
 
  
 0.979
SGO_0791
Conserved hypothetical protein.
       0.863
SGO_0793
Conserved hypothetical protein; Identified by match to protein family HMM PF03926; Belongs to the SprT family.
 
     0.786
SGO_0792
Conserved hypothetical protein; Identified by match to protein family HMM PF00575.
       0.718
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.708
SGO_1114
Protein of unknown function (DUF1149) superfamily; Identified by match to protein family HMM PF06619.
  
     0.546
SGO_0734
PspC domain protein; Identified by match to protein family HMM PF04024.
 
     0.504
SGO_0343
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
       0.455
SGO_0029
Conserved hypothetical protein; Identified by match to protein family HMM PF06257.
  
     0.422
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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