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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0799Membrane protein, putative. (542 aa)    
Predicted Functional Partners:
SGO_0798
ABC transporter, ATP-binding protein SP1381; Identified by match to protein family HMM PF00005.
 
     0.934
cshA
Surface-associated protein CshA; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.607
cshB
Surface-associated protein CshB; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.604
SGO_2005
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
  
     0.583
SGO_0797
RocB protein, putative.
       0.537
SGO_0828
Conserved hypothetical protein.
  
     0.524
SGO_0380
Conserved hypothetical protein.
  
     0.514
SGO_0144
Conserved hypothetical protein.
  
     0.489
SGO_1443
Membrane protein, putative; Identified by match to protein family HMM TIGR02206.
  
     0.474
SGO_1615
CAAX amino terminal protease family; Identified by match to protein family HMM PF02517.
  
     0.466
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.