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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0835Nitroreductase; Identified by match to protein family HMM PF00881. (201 aa)    
Predicted Functional Partners:
pepV
Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01886; match to protein family HMM TIGR01887.
  
  
 0.673
birA
BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.609
SGO_0833
Phosphoesterase-related gene; Identified by match to protein family HMM PF00149.
 
     0.592
SGO_0837
uracil-DNA glycosylase; Identified by match to protein family HMM PF03167.
  
    0.567
gloA
Lactoylglutathione lyase; Identified by match to protein family HMM PF00903.
  
    0.546
SGO_0834
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
SGO_0377
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.484
SGO_1733
Membrane protein, putative; Identified by match to protein family HMM PF01061.
  
  
 0.484
SGO_0838
YbaK / prolyl-tRNA synthetases associated domain, putative; Identified by match to protein family HMM PF04073.
       0.483
SGO_0399
Membrane protein, putative.
  
  
 0.412
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.