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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0838YbaK / prolyl-tRNA synthetases associated domain, putative; Identified by match to protein family HMM PF04073. (162 aa)    
Predicted Functional Partners:
SGO_0837
uracil-DNA glycosylase; Identified by match to protein family HMM PF03167.
       0.776
SGO_0839
TfoX N-terminal domain superfamily; Identified by match to protein family HMM PF04993.
       0.603
pepV
Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01886; match to protein family HMM TIGR01887.
       0.597
SGO_1394
Conserved hypothetical protein; Identified by match to protein family HMM PF03483.
  
     0.574
SGO_0835
Nitroreductase; Identified by match to protein family HMM PF00881.
       0.483
SGO_0414
Conserved hypothetical protein.
  
     0.431
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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