Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SGO_0839TfoX N-terminal domain superfamily; Identified by match to protein family HMM PF04993. (107 aa)    
Predicted Functional Partners:
SGO_0838
YbaK / prolyl-tRNA synthetases associated domain, putative; Identified by match to protein family HMM PF04073.
       0.603
SGO_0837
uracil-DNA glycosylase; Identified by match to protein family HMM PF03167.
       0.583
cobB
NAD-dependent deacetylase (Regulatory protein SIR2-like protein); NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
    
   0.526
SGO_1347
Membrane associated lipoprotein.
  
     0.496
SGO_0895
Conserved domain protein; Identified by match to protein family HMM PF04229.
 
     0.487
SGO_0840
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.474
pepV
Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01886; match to protein family HMM TIGR01887.
       0.467
SGO_0094
Lipoprotein, putative.
  
     0.438
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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