Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SGO_0857ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (288 aa)    
Predicted Functional Partners:
SGO_0856
ABC transporter, substrate binding protein; Identified by match to protein family HMM PF04392.
    0.989
SGO_0858
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.980
SGO_1887
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.873
SGO_1888
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; match to protein family HMM PF04392; Belongs to the binding-protein-dependent transport system permease family.
  
    0.493
rnj-2
Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
       0.455
fbpA
Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.
       0.455
SGO_0795
Tributyrin esterase; Identified by match to protein family HMM PF00756.
       0.449
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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