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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rggCPutative transcriptional regulator RggC; Identified by match to protein family HMM TIGR01716. (287 aa)    
Predicted Functional Partners:
rgg
Transcriptional regulator Rgg; Regulates the expression of glucosyltransferase (gtfG).
  
  
0.938
rggB
Putative transcriptional regulator RggB; Identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716.
  
  
 
0.929
SGO_0881
Hypothetical protein; Identified by Glimmer2; putative.
       0.783
SGO_0880
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SGO_0883
Transporter, probable SP1116; Identified by match to protein family HMM PF07690.
 
     0.683
dsg
Putative permease; Identified by match to protein family HMM PF07690.
 
     0.639
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
      
 0.623
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.
      
 0.576
SGO_1472
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
   
    0.461
SGO_0261
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.459
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.