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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proVABC-type proline/glycine betaine transporter; Identified by match to protein family HMM PF00005. (242 aa)    
Predicted Functional Partners:
proWX
ABC transporter membrane-spanning permease; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 0.999
SGO_1877
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.902
SGO_1744
ABC transporter, ATP-binding protein SP0636; Identified by match to protein family HMM PF00005.
 
     
0.729
SGO_1290
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.726
cydC
Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.639
cydD
Putative ABC transporter (ATP-binding protein); Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.599
SGO_1331
HlyB/MsbA family ABC transporter; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.591
dltB
Integral membrane protein; Could be involved in the transport of activated D-alanine through the membrane.
      
 0.577
SGO_1291
ABC transporter, permease/ATP-binding protein SP1358; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     
0.557
SGO_0752
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
 
      0.532
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.