Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppsAPhosphoenolpyruvate synthase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326. (827 aa)    
Predicted Functional Partners:
SGO_0941
Conserved hypothetical protein.
 
    0.967
SGO_0939
4-hydroxybenzoate octaprenyltransferase related protein.
 
     0.963
SGO_0935
CDP-diglyceride synthetase; Identified by match to protein family HMM PF01864.
 
     0.906
SGO_0937
Phosphatidylserine synthase; Identified by match to protein family HMM PF01066.
 
    0.803
SGO_0938
Phosphatidylserine decarboxylase proenzyme 2; Identified by match to protein family HMM PF02666; Belongs to the phosphatidylserine decarboxylase family.
 
    0.772
SGO_2005
LPXTG cell wall surface protein; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
  
  
 0.747
SGO_0936
Phosphoenolpyruvate synthase, putative; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326.
 
    
0.742
cshA
Surface-associated protein CshA; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.730
cshB
Surface-associated protein CshB; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.727
SGO_0144
Conserved hypothetical protein.
  
     0.712
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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