Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SGO_0944ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (226 aa)    
Predicted Functional Partners:
SGO_0752
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
   0.943
SGO_1418
ATP-binding cassette transporter-like protein; Identified by match to protein family HMM PF02687.
   0.930
SGO_0945
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
   0.913
SGO_0943
Conserved hypothetical protein.
   
   0.802
SGO_0729
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.780
SGO_0947
Probable hydrolase.
  
    0.551
SGO_0946
Deblocking aminopeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM PF05343.
  
    0.542
SGO_1483
ABC transporter, permease protein, probable SP0913; Identified by match to protein family HMM PF02687.
  
   0.502
zmpC
Zinc metalloproteinase C; Identified by match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07554; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01168.
       0.500
SGO_0877
Permease domain protein; Identified by match to protein family HMM PF02687.
  
   0.493
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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