STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGO_0944ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (226 aa)    
Predicted Functional Partners:
SGO_0752
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF02687.
 
 0.955
SGO_1418
ATP-binding cassette transporter-like protein; Identified by match to protein family HMM PF02687.
 
 0.946
SGO_0945
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.932
SGO_0729
ABC transporter permease protein; Identified by match to protein family HMM PF02687.
 
 
 0.821
SGO_0943
Conserved hypothetical protein.
   
   0.807
SGO_1483
ABC transporter, permease protein, probable SP0913; Identified by match to protein family HMM PF02687.
  
 
 0.611
SGO_0877
Permease domain protein; Identified by match to protein family HMM PF02687.
  
 
 0.605
SGO_1498
ABC transporter, permease protein, probable SP0913.
  
 
 0.597
SGO_0946
Deblocking aminopeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM PF05343.
       0.542
SGO_0947
Probable hydrolase.
  
    0.541
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.